Variant report

Variant	rs11894895
Chromosome Location	chr2:98436017-98436018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10166513	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10167772	0.94[ASN][1000 genomes]
rs10168543	1.00[ASN][1000 genomes]
rs10175129	0.94[ASN][1000 genomes]
rs10180434	0.94[ASN][1000 genomes]
rs10180722	0.85[EUR][1000 genomes]
rs10183768	0.94[ASN][1000 genomes]
rs10187061	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10188497	1.00[ASN][1000 genomes]
rs10188713	1.00[ASN][1000 genomes]
rs10189414	0.94[ASN][1000 genomes]
rs10191101	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10191483	0.82[AMR][1000 genomes]
rs10202138	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10206684	0.94[ASN][1000 genomes]
rs10209970	0.88[ASN][1000 genomes]
rs10210520	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10210880	0.88[ASN][1000 genomes]
rs11886417	0.88[ASN][1000 genomes]
rs11893437	0.91[ASN][1000 genomes]
rs11894541	0.94[ASN][1000 genomes]
rs11897301	1.00[ASN][1000 genomes]
rs12712117	1.00[ASN][1000 genomes]
rs12712120	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12712162	0.88[ASN][1000 genomes]
rs12712163	0.81[ASN][1000 genomes]
rs12712172	0.94[ASN][1000 genomes]
rs12992955	0.94[ASN][1000 genomes]
rs13000585	0.94[ASN][1000 genomes]
rs13004862	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13008904	0.94[ASN][1000 genomes]
rs13010004	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446327	1.00[ASN][1000 genomes]
rs1960329	1.00[ASN][1000 genomes]
rs1982336	1.00[ASN][1000 genomes]
rs2121271	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34190123	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34305873	0.91[ASN][1000 genomes]
rs34414288	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34469351	0.84[ASN][1000 genomes]
rs35185431	1.00[ASN][1000 genomes]
rs35203092	1.00[ASN][1000 genomes]
rs35776557	0.90[ASN][1000 genomes]
rs35807655	0.94[ASN][1000 genomes]
rs35940587	0.88[ASN][1000 genomes]
rs36079497	0.88[ASN][1000 genomes]
rs3821053	1.00[ASN][1000 genomes]
rs55753459	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6543088	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6543111	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6712078	1.00[ASN][1000 genomes]
rs6718982	0.88[ASN][1000 genomes]
rs6721323	0.94[ASN][1000 genomes]
rs6728312	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738401	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6751727	0.94[ASN][1000 genomes]
rs6755021	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6756969	0.88[ASN][1000 genomes]
rs6760008	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68115667	0.88[ASN][1000 genomes]
rs6875	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71429373	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs718159	1.00[ASN][1000 genomes]
rs7557495	0.94[ASN][1000 genomes]
rs7570009	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7578638	0.88[ASN][1000 genomes]
rs7582298	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7588227	0.88[ASN][1000 genomes]
rs7593290	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594928	0.94[ASN][1000 genomes]
rs7595039	1.00[ASN][1000 genomes]
rs7599043	0.94[ASN][1000 genomes]
rs7605288	0.88[ASN][1000 genomes]
rs9973490	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531382	chr2:98250628-98457616	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv526360	chr2:98403683-98814054	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv521568	chr2:98403683-98826203	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1004220	chr2:98423421-98816010	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1007259	chr2:98429744-98818080	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv535832	chr2:98429744-98818080	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98387800-98438200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:98402000-98440400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr2:98405800-98459600	Weak transcription	Stomach Mucosa	stomach
4	chr2:98406400-98469200	Weak transcription	A549	lung
5	chr2:98409400-98484200	Weak transcription	HUVEC	blood vessel
6	chr2:98409800-98485000	Weak transcription	Hela-S3	cervix
7	chr2:98410000-98446000	Weak transcription	Colonic Mucosa	Colon
8	chr2:98410000-98456200	Weak transcription	Thymus	Thymus
9	chr2:98410000-98456800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:98410000-98456800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:98410000-98457400	Weak transcription	Small Intestine	intestine
12	chr2:98422000-98436200	Weak transcription	Colon Smooth Muscle	Colon
13	chr2:98422000-98456200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr2:98423800-98437200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr2:98424000-98438600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr2:98424000-98442600	Strong transcription	Primary B cells from peripheral blood	blood
17	chr2:98424000-98446800	Weak transcription	Fetal Heart	heart
18	chr2:98424000-98475000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr2:98424200-98461600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr2:98424800-98436600	Strong transcription	Primary B cells from cord blood	blood
21	chr2:98425600-98456800	Weak transcription	Esophagus	oesophagus
22	chr2:98425600-98461000	Weak transcription	Brain Germinal Matrix	brain
23	chr2:98426000-98445400	Weak transcription	Gastric	stomach
24	chr2:98426000-98456800	Weak transcription	Right Ventricle	heart
25	chr2:98426200-98456800	Weak transcription	Pancreas	Pancrea
26	chr2:98426400-98436600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr2:98426400-98437000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:98426400-98456200	Weak transcription	NHEK	skin
29	chr2:98426400-98456800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr2:98428000-98466600	Weak transcription	K562	blood
31	chr2:98428200-98456600	Weak transcription	Brain Angular Gyrus	brain
32	chr2:98428400-98447400	Weak transcription	Psoas Muscle	Psoas
33	chr2:98428600-98436400	Weak transcription	Spleen	Spleen
34	chr2:98428600-98447400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr2:98428600-98448800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr2:98428600-98456000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr2:98428600-98456600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr2:98428600-98461200	Weak transcription	Fetal Brain Male	brain
39	chr2:98428600-98464600	Weak transcription	HSMMtube	muscle
40	chr2:98428800-98437600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr2:98428800-98485000	Weak transcription	NHLF	lung
42	chr2:98429000-98438600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr2:98429000-98470600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr2:98429200-98438400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr2:98429200-98448600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr2:98429200-98448800	Weak transcription	Fetal Kidney	kidney
47	chr2:98429200-98456600	Weak transcription	Fetal Lung	lung
48	chr2:98429800-98439400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr2:98430000-98467800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr2:98430200-98438600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links