Variant report

Variant	rs35776557
Chromosome Location	chr2:98484830-98484831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10166513	0.97[ASN][1000 genomes]
rs10167772	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10168543	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10168709	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10169155	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10175129	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10176826	0.82[EUR][1000 genomes]
rs10180434	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10180837	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10183768	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10184393	0.85[EUR][1000 genomes]
rs10184457	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10184552	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10188497	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10188713	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10189414	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10191101	0.97[ASN][1000 genomes]
rs10192322	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10202138	0.97[ASN][1000 genomes]
rs10206684	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10208070	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10209970	0.90[ASN][1000 genomes]
rs10210299	0.81[EUR][1000 genomes]
rs10210520	0.90[ASN][1000 genomes]
rs10210880	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11886417	0.90[ASN][1000 genomes]
rs11893437	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11894541	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11894895	0.90[ASN][1000 genomes]
rs11895170	0.81[EUR][1000 genomes]
rs11897301	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12712117	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12712120	0.90[ASN][1000 genomes]
rs12712147	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12712162	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12712163	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12712172	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12992955	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13000585	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13004862	0.80[ASN][1000 genomes]
rs13008678	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13008904	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13010004	0.90[ASN][1000 genomes]
rs13012645	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13387725	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13404788	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13427422	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1446327	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1503202	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1960329	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1982336	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2121271	0.90[ASN][1000 genomes]
rs2293679	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34190123	0.97[ASN][1000 genomes]
rs34305873	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34414288	0.90[ASN][1000 genomes]
rs34469351	0.93[ASN][1000 genomes]
rs35185431	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35203092	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35402416	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35807655	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35940587	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36079497	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3821053	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55753459	0.97[ASN][1000 genomes]
rs55817781	0.81[EUR][1000 genomes]
rs6543088	0.82[ASN][1000 genomes]
rs6543111	0.88[ASN][1000 genomes]
rs6707719	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6707750	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6712078	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6713504	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6718982	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6721323	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6728312	0.90[ASN][1000 genomes]
rs6738401	0.97[ASN][1000 genomes]
rs6751727	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6755021	0.97[ASN][1000 genomes]
rs6756969	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6760008	0.90[ASN][1000 genomes]
rs68115667	0.90[ASN][1000 genomes]
rs71429373	0.97[ASN][1000 genomes]
rs718159	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7557495	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7570009	0.90[ASN][1000 genomes]
rs7578638	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7582298	0.97[ASN][1000 genomes]
rs7588227	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7591374	0.86[EUR][1000 genomes]
rs7593290	0.90[ASN][1000 genomes]
rs7594928	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7595039	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7599043	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7605288	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9784011	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9808558	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9973490	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526360	chr2:98403683-98814054	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521568	chr2:98403683-98826203	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1004220	chr2:98423421-98816010	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1007259	chr2:98429744-98818080	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv535832	chr2:98429744-98818080	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1009218	chr2:98442640-98816010	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1003925	chr2:98442640-98821102	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv999442	chr2:98448732-98816010	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1013902	chr2:98454309-98818080	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1013416	chr2:98472701-98688729	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98409800-98485000	Weak transcription	Hela-S3	cervix
2	chr2:98428800-98485000	Weak transcription	NHLF	lung
3	chr2:98434400-98485800	Weak transcription	Lung	lung
4	chr2:98447800-98502800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:98457000-98485600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:98457200-98485800	Weak transcription	Brain Anterior Caudate	brain
7	chr2:98457400-98485800	Weak transcription	Aorta	Aorta
8	chr2:98457600-98485400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:98457800-98485200	Weak transcription	Brain Hippocampus Middle	brain
10	chr2:98458200-98486000	Weak transcription	Ovary	ovary
11	chr2:98458200-98486800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr2:98458600-98485600	Weak transcription	Placenta	Placenta
13	chr2:98459400-98485000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:98460000-98486000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr2:98461600-98485400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr2:98462800-98485600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr2:98466600-98485600	Weak transcription	Brain Angular Gyrus	brain
18	chr2:98467000-98485000	Weak transcription	Osteobl	bone
19	chr2:98467000-98486800	Weak transcription	K562	blood
20	chr2:98468400-98486400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr2:98468600-98486200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr2:98469000-98485000	Weak transcription	Fetal Thymus	thymus
23	chr2:98469200-98486000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr2:98469400-98486600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr2:98470200-98485000	Weak transcription	A549	lung
26	chr2:98471400-98485000	Weak transcription	Right Atrium	heart
27	chr2:98471400-98485800	Weak transcription	Brain Substantia Nigra	brain
28	chr2:98475400-98485800	Weak transcription	Gastric	stomach
29	chr2:98475600-98485200	Weak transcription	Dnd41	blood
30	chr2:98475600-98485600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr2:98475800-98485000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr2:98475800-98485200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:98475800-98485400	Weak transcription	Colon Smooth Muscle	Colon
34	chr2:98475800-98485600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr2:98475800-98486600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr2:98476200-98486800	Weak transcription	Small Intestine	intestine
37	chr2:98476600-98486000	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr2:98476800-98486800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr2:98477000-98485000	Weak transcription	Stomach Mucosa	stomach
40	chr2:98478000-98485200	Weak transcription	Spleen	Spleen
41	chr2:98478200-98485000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr2:98478400-98485000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr2:98478400-98485000	Weak transcription	HSMM	muscle
44	chr2:98478400-98485200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr2:98478400-98485600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr2:98478600-98485000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr2:98478600-98485000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr2:98478600-98485000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr2:98478600-98485200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr2:98478600-98485200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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