Variant report

Variant	rs9784011
Chromosome Location	chr2:98547636-98547637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10167772	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10168543	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10168709	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10169155	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10175129	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10176826	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10180434	0.96[CEU][hapmap];0.85[CHB][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10180837	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10183768	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10184393	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10184457	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10184552	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10188497	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10188713	0.96[CEU][hapmap];0.85[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10189414	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10191101	0.85[CHB][hapmap]
rs10192322	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10206684	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10208070	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10209970	0.85[CHB][hapmap]
rs10210299	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10210880	0.85[EUR][1000 genomes]
rs1024086	0.85[CHB][hapmap]
rs11893437	0.96[CEU][hapmap];0.85[CHB][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11894541	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11895170	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11897301	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12712117	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12712147	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12712162	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12712163	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12712172	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12992955	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13000585	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13008678	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13008904	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13009300	0.95[ASN][1000 genomes]
rs13012645	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13387725	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13404788	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13427422	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1446327	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1503202	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1960329	0.96[CEU][hapmap];0.84[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1982336	0.85[CEU][hapmap];0.85[CHB][hapmap]
rs2121271	0.85[CHB][hapmap]
rs2293679	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2305142	0.81[CEU][hapmap]
rs34305873	0.83[AMR][1000 genomes]
rs35203092	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35402416	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35776557	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35807655	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35940587	0.86[EUR][1000 genomes]
rs36079497	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3821053	0.96[CEU][hapmap];0.85[CHB][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55817781	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6543088	0.85[CHB][hapmap]
rs6707719	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6707750	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6712078	0.96[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6713504	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6718982	0.96[CEU][hapmap];0.85[CHB][hapmap];0.80[YRI][hapmap];0.85[EUR][1000 genomes]
rs6721323	0.85[CEU][hapmap];0.85[CHB][hapmap]
rs6721467	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6751727	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6756969	0.85[EUR][1000 genomes]
rs6760008	0.85[CHB][hapmap]
rs6875	0.85[CHB][hapmap]
rs718159	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7557495	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7578638	0.85[EUR][1000 genomes]
rs7588227	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7591374	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7594928	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7595039	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7599043	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7605288	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9808558	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526360	chr2:98403683-98814054	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521568	chr2:98403683-98826203	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1004220	chr2:98423421-98816010	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1007259	chr2:98429744-98818080	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv535832	chr2:98429744-98818080	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1009218	chr2:98442640-98816010	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1003925	chr2:98442640-98821102	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv999442	chr2:98448732-98816010	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1013902	chr2:98454309-98818080	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1013416	chr2:98472701-98688729	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv3506993	chr2:98543670-98548968	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3506999	chr2:98544070-98548868	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3506992	chr2:98544118-98548340	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3458073	chr2:98544638-98547974	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3506991	chr2:98544656-98547979	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3506997	chr2:98544674-98547977	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3458071	chr2:98544684-98547951	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3458072	chr2:98544690-98547908	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3506995	chr2:98544693-98547922	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3506994	chr2:98544721-98547918	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3458070	chr2:98544765-98547875	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3506998	chr2:98544775-98547874	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3458074	chr2:98544779-98547872	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3507000	chr2:98544779-98547872	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv20031	chr2:98544799-98547910	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98504600-98552200	Weak transcription	NHLF	lung
2	chr2:98520200-98552200	Weak transcription	Brain Angular Gyrus	brain
3	chr2:98520600-98550600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:98524600-98552600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr2:98524800-98552200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr2:98525000-98551600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:98525600-98548200	Weak transcription	Pancreas	Pancrea
8	chr2:98528600-98550600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:98529000-98552200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr2:98531000-98552400	Weak transcription	Right Atrium	heart
11	chr2:98531200-98552200	Weak transcription	Fetal Thymus	thymus
12	chr2:98531600-98548200	Weak transcription	K562	blood
13	chr2:98533800-98552000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr2:98534200-98551600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr2:98538800-98548200	Weak transcription	Gastric	stomach
16	chr2:98538800-98552400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr2:98539000-98551600	Weak transcription	A549	lung
18	chr2:98541200-98552400	Weak transcription	Esophagus	oesophagus
19	chr2:98541400-98552200	Weak transcription	NHEK	skin
20	chr2:98541600-98550400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr2:98541600-98552400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr2:98541600-98552400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:98541600-98552400	Weak transcription	Aorta	Aorta
24	chr2:98541600-98552400	Weak transcription	Lung	lung
25	chr2:98541800-98552400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr2:98542000-98548000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr2:98542000-98548200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr2:98542000-98548200	Weak transcription	Colonic Mucosa	Colon
29	chr2:98542000-98552000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr2:98542000-98552200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:98542000-98552200	Weak transcription	Right Ventricle	heart
32	chr2:98542000-98552200	Weak transcription	HepG2	liver
33	chr2:98542000-98552400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr2:98542000-98552400	Weak transcription	Left Ventricle	heart
35	chr2:98542000-98552400	Weak transcription	Stomach Smooth Muscle	stomach
36	chr2:98542000-98552400	Weak transcription	Thymus	Thymus
37	chr2:98542000-98552800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr2:98542200-98548000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr2:98542200-98548200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr2:98542200-98550000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr2:98542200-98550200	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr2:98542200-98550400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr2:98542200-98551000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr2:98542200-98551600	Weak transcription	Dnd41	blood
45	chr2:98542200-98551800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr2:98542200-98551800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr2:98542200-98552000	Weak transcription	Osteobl	bone
48	chr2:98542200-98552200	Weak transcription	Fetal Brain Female	brain
49	chr2:98542200-98552200	Weak transcription	Fetal Muscle Leg	muscle
50	chr2:98542200-98552400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links