Variant report

Variant	rs6718154
Chromosome Location	chr2:180497923-180497924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10172379	0.93[AFR][1000 genomes]
rs10192634	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10930879	0.81[ASN][1000 genomes]
rs12476520	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515269	0.99[ASN][1000 genomes]
rs1515279	0.81[ASN][1000 genomes]
rs1588848	0.97[ASN][1000 genomes]
rs2222030	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106708	0.88[ASN][1000 genomes]
rs3112960	1.00[ASN][1000 genomes]
rs3112963	0.99[ASN][1000 genomes]
rs3112965	0.99[ASN][1000 genomes]
rs35667895	0.81[ASN][1000 genomes]
rs6739057	0.91[ASN][1000 genomes]
rs872162	0.86[ASN][1000 genomes]
rs925751	1.00[ASN][1000 genomes]
rs925753	0.93[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180489600-180500800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr2:180495000-180502200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:180497000-180500800	Weak transcription	HepG2	liver
4	chr2:180497400-180500800	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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