Variant report

Variant	rs10930879
Chromosome Location	chr2:180507781-180507782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10192634	0.83[CEU][hapmap];0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs10199992	0.81[CHB][hapmap]
rs12476520	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs1515269	0.91[CHB][hapmap];0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs1515279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588848	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs2222030	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs3106708	0.87[CHB][hapmap];0.88[CHD][hapmap];0.80[ASN][1000 genomes]
rs3112943	0.83[CHD][hapmap]
rs3112960	0.86[CHB][hapmap];0.81[CHD][hapmap];0.81[ASN][1000 genomes]
rs3112963	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs3112965	0.91[CHB][hapmap];0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs35667895	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6718154	0.81[ASN][1000 genomes]
rs872162	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs925751	0.81[CHB][hapmap];0.83[CHD][hapmap];0.81[ASN][1000 genomes]
rs925753	0.91[CHB][hapmap];0.83[CHD][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180502200-180510200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:180502400-180509600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180502400-180511600	Weak transcription	Fetal Heart	heart
4	chr2:180506800-180511200	Weak transcription	Fetal Brain Female	brain
5	chr2:180507000-180508400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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