Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1033213	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs10497548	0.90[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs10803927	0.86[CHB][hapmap]
rs10930879	0.81[CHB][hapmap]
rs12693204	0.85[CEU][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs13035546	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515279	0.81[CHB][hapmap]
rs1515286	0.83[ASN][1000 genomes]
rs1515291	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821260	0.90[CHB][hapmap];0.86[CHD][hapmap];0.83[ASN][1000 genomes]
rs1877941	0.90[CHB][hapmap];0.81[CHD][hapmap];0.83[ASN][1000 genomes]
rs2037112	0.84[ASN][1000 genomes]
rs2276573	0.81[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.81[TSI][hapmap];0.83[ASN][1000 genomes]
rs3106718	0.86[CHB][hapmap]
rs3106720	0.86[CHB][hapmap]
rs3106722	0.90[CHB][hapmap]
rs3112932	0.90[CHB][hapmap];0.84[CHD][hapmap];0.83[ASN][1000 genomes]
rs3112935	0.90[CHB][hapmap]
rs3112972	0.85[CHB][hapmap]
rs34227133	0.83[ASN][1000 genomes]
rs62175185	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175186	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6718207	0.81[ASN][1000 genomes]
rs7557247	0.81[CHB][hapmap];0.89[ASN][1000 genomes]
rs7557455	0.82[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10199992	DNAJC10	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180552400-180566400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180553600-180558600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:180556400-180566000	Weak transcription	HSMM	muscle
5	chr2:180556800-180559000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:180557800-180559800	Weak transcription	Muscle Satellite Cultured Cells	--

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