Variant report

Variant	rs17821260
Chromosome Location	chr2:180521376-180521377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10199992	0.90[CHB][hapmap];0.86[CHD][hapmap];0.83[ASN][1000 genomes]
rs1033213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10497548	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10803927	0.95[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11889789	0.93[JPT][hapmap]
rs13035546	0.94[ASN][1000 genomes]
rs1515286	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1515291	0.83[ASN][1000 genomes]
rs1877941	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2037112	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2276573	1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];0.80[MKK][hapmap];0.84[TSI][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3106718	0.95[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3106720	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3106722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3112932	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3112935	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3112972	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs34227133	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62175185	0.83[ASN][1000 genomes]
rs62175186	0.89[ASN][1000 genomes]
rs6708189	0.89[JPT][hapmap]
rs6718207	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7557247	0.90[CHB][hapmap];0.88[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180517400-180521400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:180520800-180521600	Weak transcription	Fetal Brain Male	brain
3	chr2:180521200-180522000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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