Variant report

Variant	rs62175185
Chromosome Location	chr2:180560903-180560904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10199992	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1033213	0.84[ASN][1000 genomes]
rs10497548	0.90[ASN][1000 genomes]
rs13035546	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515286	0.83[ASN][1000 genomes]
rs1515291	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821260	0.83[ASN][1000 genomes]
rs1877941	0.83[ASN][1000 genomes]
rs2037112	0.84[ASN][1000 genomes]
rs2276573	0.83[ASN][1000 genomes]
rs3112932	0.83[ASN][1000 genomes]
rs34227133	0.83[ASN][1000 genomes]
rs62175186	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6718207	0.81[ASN][1000 genomes]
rs7557247	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7557455	0.90[AFR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180552400-180566400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180556400-180566000	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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