Variant report

Variant	rs2276573
Chromosome Location	chr2:180542687-180542688
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10199992	0.81[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.81[TSI][hapmap];0.83[ASN][1000 genomes]
rs1033213	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10497548	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10803927	0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11889789	0.87[JPT][hapmap]
rs13035546	0.94[ASN][1000 genomes]
rs1515286	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515291	0.83[ASN][1000 genomes]
rs17821260	1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];0.80[MKK][hapmap];0.84[TSI][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1877941	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.83[LWK][hapmap];0.84[MKK][hapmap];0.96[ASN][1000 genomes]
rs2037112	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3106718	0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs3106720	0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs3106722	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3112932	1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3112935	0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs3112972	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs34227133	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62175185	0.83[ASN][1000 genomes]
rs62175186	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6708189	0.84[JPT][hapmap]
rs6718207	0.95[ASN][1000 genomes]
rs7557247	0.90[CHB][hapmap];0.92[YRI][hapmap];0.88[ASN][1000 genomes]
rs7557455	0.85[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2276573	DNAJC10	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180540600-180543000	Weak transcription	Pancreas	Pancrea
3	chr2:180541200-180543000	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr2:180541200-180543200	Enhancers	Fetal Lung	lung
5	chr2:180541200-180543800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:180541200-180544000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:180541400-180543200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:180541400-180543200	Enhancers	Colon Smooth Muscle	Colon
9	chr2:180541600-180542800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:180541600-180543000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:180541800-180543000	Weak transcription	Left Ventricle	heart
12	chr2:180542000-180542800	Weak transcription	Fetal Brain Male	brain
13	chr2:180542000-180543000	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:180542000-180543000	Enhancers	HSMMtube	muscle
15	chr2:180542200-180543000	Enhancers	Fetal Heart	heart
16	chr2:180542200-180543000	Weak transcription	Psoas Muscle	Psoas
17	chr2:180542200-180543600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr2:180542400-180543400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:180542600-180543200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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