Variant report

Variant	rs3112972
Chromosome Location	chr2:180535252-180535253
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10199992	0.85[CHB][hapmap]
rs1033213	0.94[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs10497548	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs10803927	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11889789	0.81[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes]
rs13035546	0.85[ASN][1000 genomes]
rs13408749	0.97[AFR][1000 genomes]
rs1515286	0.89[ASN][1000 genomes]
rs17821260	0.95[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs1877941	0.95[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs2037112	0.91[ASN][1000 genomes]
rs2276573	0.94[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs3106718	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3106720	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106722	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs3112932	0.95[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs3112935	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34227133	0.90[ASN][1000 genomes]
rs62175186	0.82[ASN][1000 genomes]
rs6708189	0.86[ASW][hapmap];0.98[LWK][hapmap];0.84[MEX][hapmap];0.82[MKK][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes]
rs6718207	0.88[ASN][1000 genomes]
rs7557247	0.85[CHB][hapmap];0.80[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180531800-180536400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:180534800-180536600	Weak transcription	Fetal Intestine Large	intestine
3	chr2:180535200-180540200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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