Variant report

Variant	rs3112932
Chromosome Location	chr2:180524996-180524997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLEKHA3-19	chr2:180524913-180525120	NONHSAT075833

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10199992	0.90[CHB][hapmap];0.84[CHD][hapmap];0.83[ASN][1000 genomes]
rs1033213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10497548	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10803927	0.95[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11889789	0.93[JPT][hapmap]
rs13035546	0.94[ASN][1000 genomes]
rs1515286	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1515291	0.83[ASN][1000 genomes]
rs17821260	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1877941	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[ASN][1000 genomes]
rs2037112	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2276573	1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3106718	0.95[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3106720	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3106722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs3112935	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3112972	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs34227133	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62175185	0.83[ASN][1000 genomes]
rs62175186	0.89[ASN][1000 genomes]
rs6708189	0.89[JPT][hapmap]
rs6718207	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7557247	0.90[CHB][hapmap];0.88[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180522600-180525400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr2:180524800-180525000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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