Variant report

Variant	rs1515291
Chromosome Location	chr2:180557457-180557458
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10199992	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1033213	0.84[ASN][1000 genomes]
rs10497548	0.90[ASN][1000 genomes]
rs12693204	0.80[EUR][1000 genomes]
rs13035546	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515286	0.83[ASN][1000 genomes]
rs17821260	0.83[ASN][1000 genomes]
rs1877941	0.83[ASN][1000 genomes]
rs2037112	0.84[ASN][1000 genomes]
rs2276573	0.83[ASN][1000 genomes]
rs3112932	0.83[ASN][1000 genomes]
rs34227133	0.83[ASN][1000 genomes]
rs62175185	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175186	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6718207	0.81[ASN][1000 genomes]
rs7557247	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7557455	0.90[AFR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180552400-180566400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180553600-180558600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:180555400-180557800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr2:180555600-180557600	Enhancers	NHLF	lung
6	chr2:180555600-180557800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:180556400-180566000	Weak transcription	HSMM	muscle
8	chr2:180556800-180559000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:180557200-180557600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:180557200-180557600	Enhancers	HepG2	liver
11	chr2:180557200-180557800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr2:180557200-180557800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr2:180557400-180557800	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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