Variant report

Variant	rs872162
Chromosome Location	chr2:180479123-180479124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180477852..180480440-chr2:180482454..180484640,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10192634	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10930879	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs12476520	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1515269	0.95[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1515276	0.81[JPT][hapmap]
rs1515279	0.87[CHB][hapmap]
rs1588848	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs2222030	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs3106708	1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[ASN][1000 genomes]
rs3112943	0.88[CHD][hapmap]
rs3112960	0.91[CHB][hapmap];0.80[CHD][hapmap];0.86[ASN][1000 genomes]
rs3112963	0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs3112965	0.95[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs6718154	0.86[ASN][1000 genomes]
rs7608224	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs925751	0.87[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs925753	0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs872162	MTX2	cis	parietal	SCAN
rs872162	TTC30A	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180476600-180479400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:180476600-180479600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:180476600-180479600	Enhancers	Osteobl	bone
4	chr2:180476800-180479200	Enhancers	Fetal Heart	heart
5	chr2:180477200-180479800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:180477200-180480000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr2:180477200-180480000	Enhancers	NHLF	lung
8	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
9	chr2:180477800-180484200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:180478000-180483000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr2:180478200-180479200	Flanking Active TSS	NHEK	skin
12	chr2:180478200-180479400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:180478200-180479600	Enhancers	HSMM	muscle
14	chr2:180478400-180479400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr2:180478800-180479600	Enhancers	Fetal Lung	lung
16	chr2:180478800-180479800	Enhancers	HSMMtube	muscle
17	chr2:180478800-180481200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:180478800-180488200	Weak transcription	Lung	lung
19	chr2:180479000-180479600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:180479000-180479600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:180479000-180487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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