Variant report

Variant	rs3112943
Chromosome Location	chr2:180502356-180502357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10172379	0.96[ASN][1000 genomes]
rs10192634	0.87[JPT][hapmap]
rs10930879	0.83[CHD][hapmap]
rs12476520	0.86[JPT][hapmap]
rs1515269	0.83[CHD][hapmap];0.87[JPT][hapmap]
rs1515276	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1588848	0.86[JPT][hapmap]
rs2222030	0.86[JPT][hapmap]
rs3106708	0.81[CHD][hapmap]
rs3112960	0.94[ASW][hapmap];0.86[MKK][hapmap];0.91[YRI][hapmap]
rs3112963	0.87[JPT][hapmap];0.90[YRI][hapmap]
rs3112965	0.83[CHD][hapmap];0.87[JPT][hapmap];0.84[MKK][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes]
rs872162	0.88[CHD][hapmap]
rs925751	0.94[ASW][hapmap];0.86[MKK][hapmap];0.91[YRI][hapmap]
rs925753	0.90[CHD][hapmap];0.87[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3112943	HOXD9	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180500800-180502400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr2:180500800-180502400	Enhancers	Liver	Liver
3	chr2:180501000-180502400	Enhancers	Fetal Lung	lung
4	chr2:180501000-180502400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr2:180501000-180502400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr2:180501000-180502600	Enhancers	HSMMtube	muscle
7	chr2:180501600-180502400	Enhancers	Fetal Heart	heart
8	chr2:180501600-180502400	Enhancers	HepG2	liver
9	chr2:180502200-180510200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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