Variant report

Variant	rs3106708
Chromosome Location	chr2:180480377-180480378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10192634	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs10930879	0.87[CHB][hapmap];0.88[CHD][hapmap];0.80[ASN][1000 genomes]
rs12476520	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs1515269	0.89[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[MEX][hapmap];0.89[ASN][1000 genomes]
rs1515279	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs1588848	0.85[CEU][hapmap];0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs2222030	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs3112943	0.81[CHD][hapmap]
rs3112960	0.89[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.94[MEX][hapmap];0.88[ASN][1000 genomes]
rs3112963	0.88[CEU][hapmap];0.95[CHB][hapmap];0.89[ASN][1000 genomes]
rs3112965	0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[ASN][1000 genomes]
rs35667895	0.80[ASN][1000 genomes]
rs6718154	0.88[ASN][1000 genomes]
rs872162	1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[ASN][1000 genomes]
rs925751	0.89[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.94[MEX][hapmap];0.88[ASN][1000 genomes]
rs925753	0.95[CHB][hapmap];0.90[CHD][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180477400-180488200	Weak transcription	Pancreas	Pancrea
2	chr2:180477800-180484200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:180478000-180483000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:180478800-180481200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:180478800-180488200	Weak transcription	Lung	lung
6	chr2:180479000-180487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:180479600-180483400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:180479600-180483600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:180480000-180483400	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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