Variant report

Variant	rs6732105
Chromosome Location	chr2:55316326-55316327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:55309144..55311661-chr2:55314427..55318457,3	K562	blood:
2	chr2:55315606..55317347-chr2:55338436..55340303,2	K562	blood:
3	chr2:55300544..55302491-chr2:55314911..55316564,2	K562	blood:
4	chr2:55313997..55316994-chr2:55461231..55462844,2	K562	blood:
5	chr2:55315563..55318504-chr2:55346291..55347986,2	K562	blood:
6	chr2:55277836..55279728-chr2:55313964..55316621,2	K562	blood:
7	chr2:55315251..55317504-chr2:55320953..55322890,2	MCF-7	breast:
8	chr2:55306577..55308531-chr2:55314255..55316855,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10179627	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10193260	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6751437	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6758258	0.88[AMR][1000 genomes]
rs72914509	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55299200-55318000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:55312000-55316800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:55312000-55317400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr2:55312000-55321200	Weak transcription	Lung	lung
5	chr2:55314600-55318400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:55314800-55317000	Enhancers	Fetal Stomach	stomach
7	chr2:55314800-55317200	Enhancers	Fetal Muscle Leg	muscle
8	chr2:55315000-55318000	Weak transcription	Hela-S3	cervix
9	chr2:55315000-55319400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:55315400-55317200	Enhancers	Fetal Heart	heart
11	chr2:55315400-55317800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:55315400-55319200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:55315400-55319800	Weak transcription	A549	lung
14	chr2:55315400-55320200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr2:55315400-55320200	Weak transcription	Brain Angular Gyrus	brain
16	chr2:55315400-55320200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr2:55315400-55320600	Weak transcription	Brain Hippocampus Middle	brain
18	chr2:55315400-55320800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr2:55315400-55323600	Weak transcription	HSMMtube	muscle
20	chr2:55315600-55317800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr2:55315600-55317800	Weak transcription	NHLF	lung
22	chr2:55315600-55319000	Enhancers	K562	blood
23	chr2:55315600-55319600	Weak transcription	HUVEC	blood vessel
24	chr2:55315800-55317600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr2:55316000-55317800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr2:55316000-55317800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:55316000-55318000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr2:55316000-55320000	Weak transcription	Osteobl	bone
29	chr2:55316000-55320600	Weak transcription	Brain Substantia Nigra	brain
30	chr2:55316000-55322800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr2:55316000-55323800	Weak transcription	NHDF-Ad	bronchial
32	chr2:55316200-55317000	Enhancers	Fetal Muscle Trunk	muscle

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