Variant report

Variant	rs10179627
Chromosome Location	chr2:55318362-55318363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55309144..55311661-chr2:55314427..55318457,3	K562	blood:
2	chr2:55317491..55320389-chr2:55353097..55355543,2	K562	blood:
3	chr2:55315563..55318504-chr2:55346291..55347986,2	K562	blood:
4	chr2:55317970..55321435-chr2:55328777..55332297,3	K562	blood:

rs_ID	r²[population]
rs10193260	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10197533	0.83[GIH][hapmap]
rs13400353	0.90[GIH][hapmap]
rs13416852	0.93[GIH][hapmap];0.82[TSI][hapmap]
rs17046569	0.87[GIH][hapmap]
rs4358163	0.81[GIH][hapmap]
rs6545469	0.90[GIH][hapmap];0.82[TSI][hapmap]
rs6715980	0.87[GIH][hapmap]
rs6724138	0.88[YRI][hapmap]
rs6732105	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6744637	0.93[GIH][hapmap];0.82[TSI][hapmap]
rs6751437	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6758258	0.97[GIH][hapmap]

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55312000-55321200	Weak transcription	Lung	lung
2	chr2:55314600-55318400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:55315000-55319400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:55315400-55319200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:55315400-55319800	Weak transcription	A549	lung
6	chr2:55315400-55320200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr2:55315400-55320200	Weak transcription	Brain Angular Gyrus	brain
8	chr2:55315400-55320200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr2:55315400-55320600	Weak transcription	Brain Hippocampus Middle	brain
10	chr2:55315400-55320800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:55315400-55323600	Weak transcription	HSMMtube	muscle
12	chr2:55315600-55319000	Enhancers	K562	blood
13	chr2:55315600-55319600	Weak transcription	HUVEC	blood vessel
14	chr2:55316000-55320000	Weak transcription	Osteobl	bone
15	chr2:55316000-55320600	Weak transcription	Brain Substantia Nigra	brain
16	chr2:55316000-55322800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:55316000-55323800	Weak transcription	NHDF-Ad	bronchial
18	chr2:55316800-55327200	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr2:55317200-55319800	Weak transcription	Fetal Heart	heart
20	chr2:55317200-55323800	Weak transcription	Fetal Muscle Leg	muscle
21	chr2:55317400-55318800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr2:55317400-55322000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr2:55317600-55318400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:55317600-55318600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr2:55317800-55318400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:55317800-55318400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr2:55317800-55318400	Enhancers	NHLF	lung
28	chr2:55317800-55318600	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr2:55318000-55318400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr2:55318000-55318400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr2:55318000-55318400	Enhancers	Hela-S3	cervix
32	chr2:55318000-55318400	Enhancers	NHEK	skin
33	chr2:55318200-55318400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr2:55318200-55318400	Enhancers	Stomach Mucosa	stomach
35	chr2:55318200-55318400	Enhancers	HMEC	breast
36	chr2:55318200-55320000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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