Variant report

Variant	rs10193260
Chromosome Location	chr2:55315252-55315253
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:55309144..55311661-chr2:55314427..55318457,3	K562	blood:
2	chr2:55311726..55313252-chr2:55313684..55315379,2	K562	blood:
3	chr2:55300544..55302491-chr2:55314911..55316564,2	K562	blood:
4	chr2:55313997..55316994-chr2:55461231..55462844,2	K562	blood:
5	chr2:55277836..55279728-chr2:55313964..55316621,2	K562	blood:
6	chr2:55315251..55317504-chr2:55320953..55322890,2	MCF-7	breast:
7	chr2:55306855..55308642-chr2:55313983..55316213,2	K562	blood:
8	chr2:55306577..55308531-chr2:55314255..55316855,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

rs_ID	r²[population]
rs10179627	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10197591	0.85[CEU][hapmap]
rs13401780	0.85[CEU][hapmap]
rs13420723	0.90[AFR][1000 genomes]
rs6732105	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6751437	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6758258	0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72914509	0.83[AMR][1000 genomes]
rs7592869	0.85[CEU][hapmap]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55299200-55318000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:55312000-55316800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:55312000-55317400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr2:55312000-55321200	Weak transcription	Lung	lung
5	chr2:55314200-55315400	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr2:55314200-55316000	Enhancers	Fetal Lung	lung
7	chr2:55314400-55315400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:55314400-55315400	Enhancers	A549	lung
9	chr2:55314600-55315400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr2:55314600-55315400	Enhancers	Brain Angular Gyrus	brain
11	chr2:55314600-55315400	Enhancers	Brain Cingulate Gyrus	brain
12	chr2:55314600-55315400	Enhancers	Brain Hippocampus Middle	brain
13	chr2:55314600-55315600	Enhancers	HUVEC	blood vessel
14	chr2:55314600-55315600	Enhancers	NHLF	lung
15	chr2:55314600-55316000	Enhancers	Brain Substantia Nigra	brain
16	chr2:55314600-55318400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:55314800-55315400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:55314800-55315400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr2:55314800-55315800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:55314800-55316000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr2:55314800-55316000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:55314800-55316000	Enhancers	NHDF-Ad	bronchial
23	chr2:55314800-55316000	Enhancers	Osteobl	bone
24	chr2:55314800-55317000	Enhancers	Fetal Stomach	stomach
25	chr2:55314800-55317200	Enhancers	Fetal Muscle Leg	muscle
26	chr2:55315000-55318000	Weak transcription	Hela-S3	cervix
27	chr2:55315000-55319400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:55315200-55315400	Flanking Active TSS	Fetal Heart	heart
29	chr2:55315200-55315400	Enhancers	HSMMtube	muscle
30	chr2:55315200-55315400	Enhancers	K562	blood
31	chr2:55315200-55315600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr2:55315200-55316000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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