Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:55293555..55295689-chr2:55296862..55299716,2	K562	blood:
2	chr2:55288774..55290302-chr2:55293407..55295597,2	K562	blood:
3	chr2:55276234..55278687-chr2:55294375..55296735,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10084445	0.81[EUR][1000 genomes]
rs10170102	0.82[EUR][1000 genomes]
rs10174447	0.86[AMR][1000 genomes]
rs10175952	0.84[EUR][1000 genomes]
rs10181115	0.82[EUR][1000 genomes]
rs10182203	0.84[EUR][1000 genomes]
rs10191774	0.98[EUR][1000 genomes]
rs10193260	0.85[CEU][hapmap]
rs10197533	0.86[EUR][1000 genomes]
rs10197591	1.00[CEU][hapmap]
rs10198096	0.81[EUR][1000 genomes]
rs10206953	0.98[EUR][1000 genomes]
rs11125554	0.84[EUR][1000 genomes]
rs13400353	0.88[EUR][1000 genomes]
rs13416852	1.00[CEU][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046567	0.81[EUR][1000 genomes]
rs17046569	0.81[EUR][1000 genomes]
rs28485107	0.83[AMR][1000 genomes]
rs60989108	0.81[EUR][1000 genomes]
rs6545469	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs6545470	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6744637	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6758258	1.00[CEU][hapmap]
rs6760773	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72912579	0.86[EUR][1000 genomes]
rs7592869	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55293000-55295400	Weak transcription	Fetal Heart	heart
2	chr2:55293000-55298400	Weak transcription	K562	blood

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