Variant report

Variant	rs28485107
Chromosome Location	chr2:55299393-55299394
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10174447	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10197591	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13401780	0.83[AMR][1000 genomes]
rs6545469	0.85[AFR][1000 genomes]
rs6744637	0.87[AFR][1000 genomes]
rs6758258	1.00[EUR][1000 genomes]
rs72795460	0.87[EUR][1000 genomes]
rs72914509	1.00[EUR][1000 genomes]
rs7592869	0.88[AFR][1000 genomes]
rs7607464	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55297400-55300400	Weak transcription	Fetal Heart	heart
2	chr2:55298800-55299800	Weak transcription	Osteobl	bone
3	chr2:55299200-55318000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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