Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55275957..55278477-chr2:55309123..55311795,3	MCF-7	breast:
2	chr2:55309144..55311661-chr2:55314427..55318457,3	K562	blood:

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10174447	1.00[EUR][1000 genomes]
rs10193260	0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10197533	0.80[GIH][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap]
rs10197591	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13385999	0.90[TSI][hapmap]
rs13400353	0.93[GIH][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap]
rs13401780	1.00[CEU][hapmap]
rs13416852	1.00[CEU][hapmap];0.96[GIH][hapmap];0.82[MEX][hapmap]
rs13420723	0.81[AFR][1000 genomes]
rs17046569	0.84[GIH][hapmap]
rs28485107	1.00[EUR][1000 genomes]
rs4358163	1.00[MEX][hapmap]
rs6545469	1.00[CEU][hapmap];0.93[GIH][hapmap];0.82[MEX][hapmap]
rs6715980	0.84[GIH][hapmap];1.00[MEX][hapmap]
rs6732105	0.88[AMR][1000 genomes]
rs6744637	1.00[CEU][hapmap];0.96[GIH][hapmap]
rs6751437	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72795460	0.87[EUR][1000 genomes]
rs72914509	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7584992	0.82[MEX][hapmap]
rs7592869	1.00[CEU][hapmap]
rs7607464	0.98[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55299200-55318000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:55308800-55312000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr2:55309200-55312000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr2:55309200-55315200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr2:55310000-55311200	Enhancers	Hela-S3	cervix
6	chr2:55310200-55311000	Enhancers	Primary B cells from cord blood	blood
7	chr2:55310200-55313400	Enhancers	Fetal Lung	lung
8	chr2:55310400-55311000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr2:55310600-55311000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:55310600-55311000	Flanking Active TSS	HUVEC	blood vessel
11	chr2:55310800-55312200	Enhancers	Adipose Nuclei	Adipose

Quick Search: