Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:55276542..55278168-chr2:55289123..55291058,2	K562	blood:
2	chr2:55278606..55281085-chr2:55289009..55290511,2	K562	blood:
3	chr2:55287127..55289595-chr2:55348601..55351225,2	K562	blood:
4	chr2:55288774..55290302-chr2:55293407..55295597,2	K562	blood:
5	chr2:55287997..55290069-chr2:55324008..55326423,2	K562	blood:

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10084445	0.81[EUR][1000 genomes]
rs10170102	0.82[EUR][1000 genomes]
rs10174447	0.88[AFR][1000 genomes]
rs10175952	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10181115	0.82[EUR][1000 genomes]
rs10182203	0.84[EUR][1000 genomes]
rs10191774	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10193260	0.85[CEU][hapmap]
rs10197533	0.86[EUR][1000 genomes]
rs10197591	1.00[CEU][hapmap]
rs10198096	0.81[EUR][1000 genomes]
rs10206953	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10207701	0.81[AMR][1000 genomes]
rs11125554	0.84[EUR][1000 genomes]
rs13387710	0.81[AMR][1000 genomes]
rs13400353	0.88[EUR][1000 genomes]
rs13401780	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13416852	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046567	0.81[EUR][1000 genomes]
rs17046569	0.81[EUR][1000 genomes]
rs28485107	0.88[AFR][1000 genomes]
rs60989108	0.81[EUR][1000 genomes]
rs6545469	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6545470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6744637	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6758258	1.00[CEU][hapmap]
rs6760773	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72912579	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55278800-55290800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:55279000-55290600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:55287800-55292200	Weak transcription	Fetal Heart	heart
4	chr2:55288000-55290400	Weak transcription	K562	blood
5	chr2:55288200-55289600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr2:55288400-55289400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr2:55288800-55289600	Enhancers	Lung	lung
8	chr2:55289000-55289400	Enhancers	HepG2	liver

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