Variant report

Variant	rs6760773
Chromosome Location	chr2:55286629-55286630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10170102	0.81[EUR][1000 genomes]
rs10175952	0.82[EUR][1000 genomes]
rs10181115	0.81[EUR][1000 genomes]
rs10182203	0.82[EUR][1000 genomes]
rs10191774	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10197533	0.84[EUR][1000 genomes]
rs10206953	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11125554	0.82[EUR][1000 genomes]
rs13400353	0.86[EUR][1000 genomes]
rs13401780	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13416852	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6545469	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6545470	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6744637	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72912579	0.84[EUR][1000 genomes]
rs7592869	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55278200-55288800	Weak transcription	Lung	lung
2	chr2:55278800-55288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:55278800-55290800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:55279000-55287000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:55279000-55290600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:55279400-55287600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:55279800-55287400	Weak transcription	HSMM	muscle
8	chr2:55280000-55289000	Weak transcription	HepG2	liver
9	chr2:55280200-55287200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:55280200-55288200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr2:55281800-55287600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr2:55283600-55287600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr2:55284800-55287200	Weak transcription	Fetal Heart	heart
14	chr2:55286600-55287000	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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