Variant report

Variant	rs10175952
Chromosome Location	chr2:55264961-55264962
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55255745..55260236-chr2:55263069..55266549,5	K562	blood:
2	chr2:55256384..55258349-chr2:55263077..55265384,2	K562	blood:
3	chr2:55258610..55260236-chr2:55264059..55265743,2	K562	blood:
4	chr2:55261058..55265438-chr2:55268460..55270489,4	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10084445	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10170102	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10179491	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10180207	0.94[EUR][1000 genomes]
rs10181115	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10182203	0.96[EUR][1000 genomes]
rs10191684	0.86[AMR][1000 genomes]
rs10191748	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs10191774	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10197533	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10198096	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10206953	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10207701	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11125554	1.00[EUR][1000 genomes]
rs13385999	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs13387710	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13394823	0.86[AMR][1000 genomes]
rs13394824	0.86[AMR][1000 genomes]
rs13400353	1.00[CEU][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13401780	0.84[EUR][1000 genomes]
rs13416852	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17046567	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17046569	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4358163	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs60989108	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6545469	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6545470	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6715980	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6725187	0.86[AMR][1000 genomes]
rs6744637	0.84[EUR][1000 genomes]
rs6760773	0.82[EUR][1000 genomes]
rs72912579	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7570298	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7584992	0.86[AMR][1000 genomes]
rs7592869	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7601895	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55237600-55272600	Weak transcription	Fetal Stomach	stomach
2	chr2:55241000-55272400	Weak transcription	Fetal Kidney	kidney
3	chr2:55245600-55265600	Weak transcription	Stomach Mucosa	stomach
4	chr2:55250400-55271000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:55250400-55274000	Weak transcription	Pancreas	Pancrea
6	chr2:55253400-55273000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr2:55254200-55269800	Weak transcription	Aorta	Aorta
8	chr2:55254200-55270400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:55254800-55265000	Enhancers	Brain Substantia Nigra	brain
10	chr2:55255400-55272600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:55255400-55272600	Weak transcription	Fetal Intestine Small	intestine
12	chr2:55256400-55266600	Weak transcription	Left Ventricle	heart
13	chr2:55256400-55270400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr2:55256600-55265200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr2:55259000-55265600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:55259000-55267400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:55259000-55272800	Weak transcription	Small Intestine	intestine
18	chr2:55259200-55272800	Weak transcription	Fetal Heart	heart
19	chr2:55259400-55275200	Weak transcription	Esophagus	oesophagus
20	chr2:55260000-55265000	Strong transcription	HSMM	muscle
21	chr2:55260000-55265600	Weak transcription	NHEK	skin
22	chr2:55260800-55266000	Weak transcription	Adipose Nuclei	Adipose
23	chr2:55260800-55266200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr2:55260800-55266600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr2:55260800-55270400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr2:55260800-55271200	Weak transcription	Lung	lung
27	chr2:55260800-55271200	Weak transcription	Right Atrium	heart
28	chr2:55260800-55272000	Weak transcription	NH-A	brain
29	chr2:55260800-55272400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr2:55260800-55273200	Weak transcription	Psoas Muscle	Psoas
31	chr2:55261200-55273000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr2:55261400-55272800	Weak transcription	Thymus	Thymus
33	chr2:55261600-55265800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr2:55261600-55266000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr2:55261600-55266000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr2:55261600-55266200	Weak transcription	Brain Angular Gyrus	brain
37	chr2:55261600-55266600	Weak transcription	Fetal Thymus	thymus
38	chr2:55261600-55269400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr2:55261600-55271200	Weak transcription	Ovary	ovary
40	chr2:55262000-55266600	ZNF genes & repeats	A549	lung
41	chr2:55262600-55270200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr2:55262800-55267600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr2:55263000-55265400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr2:55263000-55266000	Weak transcription	Hela-S3	cervix
45	chr2:55263400-55265000	Enhancers	Brain Hippocampus Middle	brain
46	chr2:55263800-55265600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr2:55263800-55266200	Genic enhancers	Muscle Satellite Cultured Cells	--
48	chr2:55263800-55266800	ZNF genes & repeats	GM12878-XiMat	blood
49	chr2:55263800-55267200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr2:55264000-55265000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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