Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:55276542..55278168-chr2:55289123..55291058,2	K562	blood:
2	chr2:55278606..55281085-chr2:55289009..55290511,2	K562	blood:
3	chr2:55288774..55290302-chr2:55293407..55295597,2	K562	blood:
4	chr2:55287997..55290069-chr2:55324008..55326423,2	K562	blood:

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10084445	0.81[EUR][1000 genomes]
rs10170102	0.82[EUR][1000 genomes]
rs10174447	0.87[AFR][1000 genomes]
rs10175952	0.84[EUR][1000 genomes]
rs10181115	0.82[EUR][1000 genomes]
rs10182203	0.84[EUR][1000 genomes]
rs10191774	0.98[EUR][1000 genomes]
rs10197533	0.84[ASW][hapmap];0.83[GIH][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs10197591	1.00[CEU][hapmap]
rs10198096	0.81[EUR][1000 genomes]
rs10206953	0.98[EUR][1000 genomes]
rs11125554	0.84[EUR][1000 genomes]
rs13400353	0.96[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs13401780	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13416852	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046567	0.81[EUR][1000 genomes]
rs17046569	0.87[GIH][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs28485107	0.87[AFR][1000 genomes]
rs4358163	0.82[GIH][hapmap];0.82[TSI][hapmap]
rs60989108	0.81[EUR][1000 genomes]
rs6545469	0.84[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.98[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6545470	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6715980	0.87[GIH][hapmap];0.85[TSI][hapmap]
rs6758258	1.00[CEU][hapmap];0.96[GIH][hapmap]
rs6760773	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72912579	0.86[EUR][1000 genomes]
rs7592869	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55278800-55290800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:55279000-55290600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:55287800-55292200	Weak transcription	Fetal Heart	heart
4	chr2:55288000-55290400	Weak transcription	K562	blood
5	chr2:55289600-55294200	Weak transcription	Lung	lung

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