Variant report

Variant	rs6735255
Chromosome Location	chr2:142424358-142424359
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10198378	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12613459	0.81[JPT][hapmap]
rs12691618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13410976	0.83[CEU][hapmap];0.84[JPT][hapmap]
rs1437352	0.91[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap]
rs2028129	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs355539	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs355562	0.90[JPT][hapmap];0.81[MEX][hapmap]
rs355569	0.81[CEU][hapmap]
rs355572	0.90[JPT][hapmap]
rs453314	0.91[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap]
rs4954707	0.90[JPT][hapmap]
rs6717247	0.85[JPT][hapmap]
rs6732287	0.85[JPT][hapmap]
rs7567820	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142418600-142428400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:142424000-142424400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:142424000-142425000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:142424200-142424600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:142424200-142424600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:142424200-142424600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr2:142424200-142425000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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