Variant report

Variant	rs6732287
Chromosome Location	chr2:142439139-142439140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142432833..142434470-chr2:142438511..142441100,3	K562	blood:
2	chr2:142435826..142437412-chr2:142439074..142441235,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10195330	0.85[EUR][1000 genomes]
rs10198378	0.80[JPT][hapmap]
rs10199508	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10203762	0.87[EUR][1000 genomes]
rs10928114	0.86[CHB][hapmap]
rs10928119	0.86[EUR][1000 genomes]
rs11685267	1.00[YRI][hapmap]
rs11885368	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs11891104	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs11896157	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs12373690	0.85[EUR][1000 genomes]
rs12373842	0.86[EUR][1000 genomes]
rs12471563	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12613378	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs12613459	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs12614785	0.86[EUR][1000 genomes]
rs12622890	0.86[EUR][1000 genomes]
rs12691618	0.82[JPT][hapmap]
rs13386614	0.85[EUR][1000 genomes]
rs13390324	0.85[EUR][1000 genomes]
rs13400579	0.81[EUR][1000 genomes]
rs13410976	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13412600	0.81[EUR][1000 genomes]
rs13412704	0.81[EUR][1000 genomes]
rs1370324	0.82[CHB][hapmap]
rs1437342	0.87[EUR][1000 genomes]
rs1437352	0.90[JPT][hapmap]
rs16846899	0.81[EUR][1000 genomes]
rs16846913	0.86[EUR][1000 genomes]
rs2028131	0.81[EUR][1000 genomes]
rs2028133	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs2164700	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs2196599	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs2381155	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs28681388	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs355541	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs355562	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs355572	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs41493149	0.95[CEU][hapmap]
rs453314	0.85[JPT][hapmap]
rs4954707	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs4954922	0.91[CEU][hapmap]
rs56078839	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56261462	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6717247	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap]
rs6735255	0.85[JPT][hapmap]
rs72983806	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7563507	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs7567820	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs9653179	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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