Variant report

Variant	rs6717247
Chromosome Location	chr2:142430102-142430103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10195330	0.82[EUR][1000 genomes]
rs10198378	0.80[JPT][hapmap]
rs10199508	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10203762	0.82[EUR][1000 genomes]
rs10928114	0.81[CHB][hapmap]
rs10928119	0.83[EUR][1000 genomes]
rs11885368	0.91[CEU][hapmap]
rs11891104	0.91[CEU][hapmap]
rs11896157	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs12373690	0.82[EUR][1000 genomes]
rs12373842	0.83[EUR][1000 genomes]
rs12471563	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12613378	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs12613459	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs12614785	0.83[EUR][1000 genomes]
rs12622890	0.83[EUR][1000 genomes]
rs12691618	0.82[JPT][hapmap]
rs13386614	0.82[EUR][1000 genomes]
rs13390324	0.82[EUR][1000 genomes]
rs13410976	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1437342	0.82[EUR][1000 genomes]
rs1437352	0.90[JPT][hapmap]
rs16846913	0.83[EUR][1000 genomes]
rs2028133	0.92[CEU][hapmap]
rs2164700	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs2196599	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs2381155	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs28681388	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs355541	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs355562	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs355572	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap]
rs41493149	0.95[CEU][hapmap]
rs453314	0.85[JPT][hapmap]
rs4954707	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs4954922	0.91[CEU][hapmap]
rs56078839	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56261462	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6732287	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap]
rs6735255	0.85[JPT][hapmap]
rs72983806	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7563507	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs7567820	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs9653179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links