Variant report

Variant	rs7567820
Chromosome Location	chr2:142414934-142414935
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10190295	0.82[CEU][hapmap]
rs10198378	0.83[JPT][hapmap]
rs10199508	0.95[CEU][hapmap];0.84[JPT][hapmap]
rs10928114	1.00[CHB][hapmap]
rs10928115	0.95[CHB][hapmap]
rs11885368	0.95[CEU][hapmap]
rs11891104	0.95[CEU][hapmap]
rs11896157	1.00[CEU][hapmap]
rs12471563	0.80[EUR][1000 genomes]
rs12613378	1.00[CEU][hapmap]
rs12613459	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12691618	0.85[JPT][hapmap]
rs13410976	0.95[CEU][hapmap];0.94[JPT][hapmap]
rs1370324	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs1370325	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1437352	0.94[JPT][hapmap]
rs1816607	0.82[CEU][hapmap]
rs2028133	0.95[CEU][hapmap]
rs2164700	1.00[CEU][hapmap]
rs2196599	1.00[CEU][hapmap]
rs2381155	1.00[CEU][hapmap]
rs28681388	0.87[EUR][1000 genomes]
rs355541	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs355562	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs355572	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs41493149	1.00[CEU][hapmap]
rs453314	0.89[JPT][hapmap]
rs4954707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4954922	0.95[CEU][hapmap]
rs56078839	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56261462	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6717247	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs6724084	0.82[CEU][hapmap]
rs6732287	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs6735255	0.89[JPT][hapmap]
rs6755592	0.91[CHB][hapmap]
rs72983806	0.86[EUR][1000 genomes]
rs7563507	1.00[CEU][hapmap]
rs9653179	1.00[CEU][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv875244	chr2:142336104-142421500	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv875245	chr2:142336104-142421500	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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