Variant report

Variant	rs6751982
Chromosome Location	chr2:209202691-209202692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10171006	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10175739	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10186531	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10197824	0.86[AFR][1000 genomes]
rs10197951	0.87[AFR][1000 genomes]
rs10197958	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10201702	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10208004	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10208191	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10208295	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10210393	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10804168	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10932256	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10932259	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11677618	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11691208	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11691313	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11693993	0.81[ASN][1000 genomes]
rs11695873	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12185547	1.00[EUR][1000 genomes]
rs12465862	1.00[EUR][1000 genomes]
rs12478198	1.00[EUR][1000 genomes]
rs12479282	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12617521	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12618837	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12621871	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12623816	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12694105	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12694109	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1370370	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1437414	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1446320	1.00[EUR][1000 genomes]
rs1446321	1.00[EUR][1000 genomes]
rs1465803	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1465804	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1469941	0.86[ASN][1000 genomes]
rs1529976	0.85[AFR][1000 genomes]
rs1529979	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1561240	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16840898	1.00[EUR][1000 genomes]
rs16840910	1.00[EUR][1000 genomes]
rs16840936	1.00[EUR][1000 genomes]
rs16841092	0.81[ASN][1000 genomes]
rs1838794	1.00[EUR][1000 genomes]
rs1838795	1.00[EUR][1000 genomes]
rs1838796	1.00[EUR][1000 genomes]
rs1866044	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1866045	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2028146	1.00[EUR][1000 genomes]
rs2043720	1.00[EUR][1000 genomes]
rs2044457	1.00[EUR][1000 genomes]
rs2118295	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2118296	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2118297	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2196604	0.80[AFR][1000 genomes]
rs2304544	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2363463	1.00[EUR][1000 genomes]
rs2363468	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2363469	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2363579	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2885785	1.00[EUR][1000 genomes]
rs2885786	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4499359	0.84[AFR][1000 genomes]
rs4673385	1.00[EUR][1000 genomes]
rs4673386	1.00[EUR][1000 genomes]
rs4673390	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4673392	0.88[AFR][1000 genomes]
rs4673395	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4673396	0.85[AFR][1000 genomes]
rs4675745	1.00[EUR][1000 genomes]
rs4675747	1.00[EUR][1000 genomes]
rs4675750	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4675754	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4675755	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4675757	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4675758	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4675760	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4675761	0.81[ASN][1000 genomes]
rs57553077	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57797425	1.00[EUR][1000 genomes]
rs59149007	0.86[ASN][1000 genomes]
rs6435436	1.00[EUR][1000 genomes]
rs6435437	1.00[EUR][1000 genomes]
rs6435441	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6435443	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6435444	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6435445	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6435446	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6435448	0.81[ASN][1000 genomes]
rs6435450	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6435452	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6435454	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6705163	1.00[EUR][1000 genomes]
rs6708926	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6709286	0.84[AFR][1000 genomes]
rs6711933	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6713477	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6718402	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6720289	0.83[AFR][1000 genomes]
rs6721780	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6725932	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6733607	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6734963	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6742461	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6758207	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7355562	0.81[ASN][1000 genomes]
rs7564882	1.00[EUR][1000 genomes]
rs7569723	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7574324	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7576852	1.00[EUR][1000 genomes]
rs7580715	1.00[EUR][1000 genomes]
rs7581075	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7592472	0.81[ASN][1000 genomes]
rs7605498	1.00[EUR][1000 genomes]
rs893253	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs893254	0.82[AFR][1000 genomes]
rs893255	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs893256	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9283521	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs934712	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs934714	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs959855	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9646839	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs976247	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs994696	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs994697	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv875752	chr2:209141066-209235373	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209147400-209225600	Weak transcription	Stomach Mucosa	stomach
2	chr2:209165800-209204000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:209179000-209220600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:209180600-209224600	Strong transcription	Fetal Thymus	thymus
5	chr2:209182400-209224200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:209185600-209224000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:209188400-209213400	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:209188400-209221400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:209188400-209223400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr2:209188600-209214200	Strong transcription	Placenta	Placenta
11	chr2:209188800-209208400	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr2:209188800-209208600	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr2:209188800-209211200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:209188800-209211200	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr2:209188800-209212000	Strong transcription	Adipose Nuclei	Adipose
16	chr2:209188800-209212400	Strong transcription	NH-A	brain
17	chr2:209188800-209213200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:209188800-209214000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr2:209188800-209215400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:209188800-209220400	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr2:209188800-209221200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr2:209188800-209221200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr2:209188800-209221800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr2:209188800-209222200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:209188800-209222400	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr2:209188800-209222600	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr2:209188800-209223600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr2:209188800-209223800	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr2:209188800-209224000	Strong transcription	Primary B cells from cord blood	blood
30	chr2:209188800-209224000	Strong transcription	Primary hematopoietic stem cells	blood
31	chr2:209188800-209224200	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr2:209188800-209224400	Strong transcription	Dnd41	blood
33	chr2:209189200-209209000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr2:209190600-209224200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr2:209191000-209212600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr2:209191000-209218000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr2:209191200-209203800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr2:209191200-209206200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr2:209191200-209211600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr2:209191200-209212600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr2:209191200-209215400	Weak transcription	Right Ventricle	heart
42	chr2:209191200-209215600	Weak transcription	Aorta	Aorta
43	chr2:209191200-209224200	Strong transcription	Primary B cells from peripheral blood	blood
44	chr2:209192400-209218600	Weak transcription	Hela-S3	cervix
45	chr2:209192600-209214200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr2:209194000-209209000	Strong transcription	Fetal Muscle Trunk	muscle
47	chr2:209194400-209214000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr2:209194400-209220600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr2:209194800-209208600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr2:209195200-209203000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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