Variant report

Variant	rs6770000
Chromosome Location	chr3:146109133-146109134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs1033117	0.82[ASN][1000 genomes]
rs10804713	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10804714	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10935626	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10935631	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs10935632	0.89[CEU][hapmap]
rs11720256	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12053987	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12054302	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12054308	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12054453	0.83[EUR][1000 genomes]
rs12054455	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12107218	0.83[EUR][1000 genomes]
rs12486656	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12486737	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12487546	0.89[CEU][hapmap]
rs12487572	0.86[EUR][1000 genomes]
rs12492503	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12494007	0.95[CEU][hapmap];0.95[JPT][hapmap]
rs12494206	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12497907	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12629356	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12629420	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12633694	0.81[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap]
rs12634107	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13064298	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13068178	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs13068800	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13081634	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13088225	0.81[CEU][hapmap];0.88[GIH][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs13089349	0.82[ASN][1000 genomes]
rs13090489	0.89[CEU][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs13092702	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1403640	0.83[EUR][1000 genomes]
rs1403641	0.89[CEU][hapmap];0.88[GIH][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs1403642	0.83[EUR][1000 genomes]
rs1403643	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1403644	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1403645	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1523334	0.82[EUR][1000 genomes]
rs1523335	0.92[CEU][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1523336	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs1608389	0.82[EUR][1000 genomes]
rs1608390	0.82[EUR][1000 genomes]
rs1608391	0.92[CEU][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs1608392	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs17351881	0.89[CEU][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2037565	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2091064	0.84[EUR][1000 genomes]
rs2222465	0.82[EUR][1000 genomes]
rs2222466	0.92[CEU][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2867865	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2868436	0.92[CEU][hapmap];0.95[JPT][hapmap]
rs2868438	0.84[EUR][1000 genomes]
rs34198003	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34359311	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34535967	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34696856	0.81[EUR][1000 genomes]
rs34740686	0.83[EUR][1000 genomes]
rs35082616	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35223042	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35336826	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35374128	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35695439	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4234358	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs4282029	0.88[EUR][1000 genomes]
rs4333063	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4334615	0.83[EUR][1000 genomes]
rs4355250	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs4380387	0.92[CEU][hapmap];0.80[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4389447	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4444684	0.92[CEU][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4476473	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4558726	0.83[EUR][1000 genomes]
rs4563382	0.82[ASN][1000 genomes]
rs4569626	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4572737	0.89[CEU][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs4600794	0.81[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap]
rs4681119	0.89[CEU][hapmap]
rs4681120	0.96[CEU][hapmap];0.95[JPT][hapmap]
rs4681318	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4681319	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4681320	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4681321	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4681322	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs473517	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs544043	0.80[AMR][1000 genomes]
rs56004717	0.84[ASN][1000 genomes]
rs57545585	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58445343	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62272150	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6440429	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6440430	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6440432	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6440435	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6766583	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6766800	0.92[CEU][hapmap];0.95[JPT][hapmap]
rs6767156	0.89[CEU][hapmap]
rs6772169	0.84[ASN][1000 genomes]
rs6774338	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6794891	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794893	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6798352	0.80[EUR][1000 genomes]
rs6801846	0.83[EUR][1000 genomes]
rs6801964	0.83[EUR][1000 genomes]
rs6806369	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6806535	0.92[CEU][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs692749	0.80[AMR][1000 genomes]
rs7431927	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7434147	0.81[EUR][1000 genomes]
rs7434212	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7614557	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7617214	0.85[CEU][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs7619521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620107	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7628445	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7633474	0.80[EUR][1000 genomes]
rs7645939	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs7646988	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7650361	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7650546	0.84[EUR][1000 genomes]
rs7653701	0.85[CEU][hapmap];0.88[GIH][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs940193	0.92[CEU][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs955611	0.93[CEU][hapmap]
rs9842818	0.88[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv536759	chr3:146087689-146123589	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1011893	chr3:146090110-146125010	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv877617	chr3:146096182-146172109	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877618	chr3:146096182-146192324	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877619	chr3:146106142-146172109	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146100800-146112600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:146101600-146111800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:146107200-146109600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:146107200-146110000	Enhancers	Fetal Lung	lung
5	chr3:146108000-146109400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:146108000-146109600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:146108000-146109600	Enhancers	Osteobl	bone
8	chr3:146108400-146109200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:146108400-146109200	Enhancers	NH-A	brain
10	chr3:146108600-146109200	Enhancers	Adipose Nuclei	Adipose
11	chr3:146108600-146109200	Enhancers	Small Intestine	intestine
12	chr3:146108600-146109200	Enhancers	NHDF-Ad	bronchial
13	chr3:146108800-146109600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:146108800-146109600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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