Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1033116	0.83[ASN][1000 genomes]
rs1033117	0.98[ASN][1000 genomes]
rs12485655	0.82[ASN][1000 genomes]
rs12494817	0.84[ASN][1000 genomes]
rs12495507	0.84[ASN][1000 genomes]
rs12497907	0.84[ASN][1000 genomes]
rs12634107	0.85[ASN][1000 genomes]
rs13064298	0.84[ASN][1000 genomes]
rs13089349	0.98[ASN][1000 genomes]
rs1512077	0.84[ASN][1000 genomes]
rs1858387	0.84[ASN][1000 genomes]
rs2137227	0.83[ASN][1000 genomes]
rs2137228	0.84[ASN][1000 genomes]
rs2137229	0.83[ASN][1000 genomes]
rs2867086	0.83[ASN][1000 genomes]
rs2867087	0.84[ASN][1000 genomes]
rs2867865	0.93[ASN][1000 genomes]
rs2867867	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4389447	0.84[ASN][1000 genomes]
rs4553948	0.84[ASN][1000 genomes]
rs4563382	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4681317	0.84[ASN][1000 genomes]
rs58445343	0.84[ASN][1000 genomes]
rs62272150	0.81[ASN][1000 genomes]
rs6770000	0.84[ASN][1000 genomes]
rs6772169	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6794891	0.84[ASN][1000 genomes]
rs6794893	0.84[ASN][1000 genomes]
rs7431927	0.84[ASN][1000 genomes]
rs7619521	0.84[ASN][1000 genomes]
rs7642687	0.84[ASN][1000 genomes]
rs907491	0.84[ASN][1000 genomes]
rs9842818	0.98[ASN][1000 genomes]
rs9855283	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv19457	chr3:146071361-146085768	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
3	esv3428127	chr3:146073560-146082194	ZNF genes & repeats Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3363313	chr3:146075716-146081641	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146077200-146081200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:146079400-146080800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:146080400-146080800	Active TSS	ES-I3 Cell Line	embryonic stem cell

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