Variant report

Variant	rs6772169
Chromosome Location	chr3:146087138-146087139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1018271	0.83[EUR][1000 genomes]
rs1033116	0.80[ASN][1000 genomes]
rs1033117	0.94[ASN][1000 genomes]
rs12485655	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12494007	0.89[JPT][hapmap]
rs12494817	0.81[ASN][1000 genomes]
rs12495507	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12497907	0.84[ASN][1000 genomes]
rs12633694	0.84[JPT][hapmap]
rs12634107	0.85[ASN][1000 genomes]
rs13064298	0.85[ASN][1000 genomes]
rs13089349	0.94[ASN][1000 genomes]
rs1512077	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1523335	0.95[JPT][hapmap]
rs1608391	0.90[JPT][hapmap]
rs17351881	0.84[JPT][hapmap]
rs1858387	0.84[ASN][1000 genomes]
rs2137227	0.80[ASN][1000 genomes]
rs2137228	0.81[ASN][1000 genomes]
rs2137229	0.80[ASN][1000 genomes]
rs2222466	0.90[JPT][hapmap]
rs2867086	0.80[ASN][1000 genomes]
rs2867087	0.81[ASN][1000 genomes]
rs2867865	0.93[ASN][1000 genomes]
rs2867867	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2868436	0.90[JPT][hapmap]
rs4380387	0.89[JPT][hapmap]
rs4389447	0.84[ASN][1000 genomes]
rs4444684	0.94[JPT][hapmap]
rs4553948	0.81[ASN][1000 genomes]
rs4563382	0.94[ASN][1000 genomes]
rs4600794	0.84[JPT][hapmap]
rs4681120	0.89[JPT][hapmap]
rs4681317	0.81[ASN][1000 genomes]
rs56004717	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58445343	0.85[ASN][1000 genomes]
rs62272150	0.81[ASN][1000 genomes]
rs6440428	0.85[EUR][1000 genomes]
rs6766800	0.90[JPT][hapmap]
rs6770000	0.84[ASN][1000 genomes]
rs6794891	0.84[ASN][1000 genomes]
rs6794893	0.85[ASN][1000 genomes]
rs6806535	0.84[JPT][hapmap]
rs7431927	0.84[ASN][1000 genomes]
rs7619521	0.84[ASN][1000 genomes]
rs7642687	0.81[ASN][1000 genomes]
rs907491	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs940193	0.90[JPT][hapmap]
rs9842818	0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.94[ASN][1000 genomes]
rs9855283	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6772169	WWTR1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146086400-146087200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:146086400-146088600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:146086800-146087400	Enhancers	Rectal Mucosa Donor 31	rectum

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