Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1033116	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1033117	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12485655	0.93[ASN][1000 genomes]
rs12494817	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495507	0.95[ASN][1000 genomes]
rs13089349	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1512077	0.95[ASN][1000 genomes]
rs1858387	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2137227	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2137228	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137229	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2867086	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2867087	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4563382	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4681317	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56004717	0.84[ASN][1000 genomes]
rs6440428	0.86[ASN][1000 genomes]
rs6772169	0.81[ASN][1000 genomes]
rs7642687	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs907491	0.95[ASN][1000 genomes]
rs9842818	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146053600-146063600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:146054000-146063000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:146056600-146063400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:146059000-146063600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:146060400-146061600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:146060400-146061600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:146060400-146061600	Enhancers	NHDF-Ad	bronchial
8	chr3:146060400-146062000	Enhancers	Fetal Lung	lung
9	chr3:146060400-146062000	Enhancers	NHLF	lung
10	chr3:146060600-146061600	Enhancers	Ovary	ovary
11	chr3:146060800-146061600	Weak transcription	Fetal Stomach	stomach
12	chr3:146060800-146065800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:146061000-146063600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:146061200-146061600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:146061400-146061600	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search: