Variant report

Variant	rs12495507
Chromosome Location	chr3:146093242-146093243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1018271	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1033116	0.94[ASN][1000 genomes]
rs1033117	0.82[ASN][1000 genomes]
rs10935631	0.84[JPT][hapmap]
rs10935632	0.84[JPT][hapmap]
rs12485655	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12487546	0.84[JPT][hapmap]
rs12494817	0.95[ASN][1000 genomes]
rs13068178	0.84[JPT][hapmap]
rs13088225	0.82[JPT][hapmap]
rs13089349	0.82[ASN][1000 genomes]
rs13090489	0.83[JPT][hapmap]
rs1403641	0.83[JPT][hapmap]
rs1403645	0.84[JPT][hapmap]
rs1512077	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523336	0.89[JPT][hapmap]
rs1608392	0.84[JPT][hapmap]
rs1858387	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2137227	0.96[ASN][1000 genomes]
rs2137228	0.95[ASN][1000 genomes]
rs2137229	0.96[ASN][1000 genomes]
rs2867086	0.96[ASN][1000 genomes]
rs2867087	0.97[ASN][1000 genomes]
rs2867865	0.82[ASN][1000 genomes]
rs4234358	0.84[JPT][hapmap]
rs4355250	0.84[JPT][hapmap]
rs4553948	0.95[ASN][1000 genomes]
rs4563382	0.82[ASN][1000 genomes]
rs4572737	0.83[JPT][hapmap]
rs4681119	0.84[JPT][hapmap]
rs4681317	0.95[ASN][1000 genomes]
rs56004717	0.84[ASN][1000 genomes]
rs6440428	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6767156	0.84[JPT][hapmap]
rs6772169	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7642687	0.95[ASN][1000 genomes]
rs7645939	0.84[JPT][hapmap]
rs7653701	0.83[JPT][hapmap]
rs907491	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9842818	1.00[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv536759	chr3:146087689-146123589	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1011893	chr3:146090110-146125010	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146091600-146094800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:146092000-146094000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:146092800-146093400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:146093000-146093800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:146093000-146098400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:146093000-146104800	Weak transcription	Fetal Lung	lung
7	chr3:146093200-146095800	Weak transcription	Ovary	ovary

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