Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1033116	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1033117	0.85[ASN][1000 genomes]
rs10935620	0.81[EUR][1000 genomes]
rs12485655	0.94[ASN][1000 genomes]
rs12494817	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12495507	0.97[ASN][1000 genomes]
rs13089349	0.85[ASN][1000 genomes]
rs1512077	0.97[ASN][1000 genomes]
rs1606433	0.81[EUR][1000 genomes]
rs1858387	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1949150	0.80[EUR][1000 genomes]
rs2137227	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2137228	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2137229	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2203130	0.81[EUR][1000 genomes]
rs2867085	0.81[EUR][1000 genomes]
rs2867086	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4553948	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4563382	0.85[ASN][1000 genomes]
rs4681315	0.81[EUR][1000 genomes]
rs4681317	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56004717	0.84[ASN][1000 genomes]
rs6440428	0.88[ASN][1000 genomes]
rs6772169	0.81[ASN][1000 genomes]
rs7430021	0.82[EUR][1000 genomes]
rs7642687	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs907491	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9842818	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv19457	chr3:146071361-146085768	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
3	esv3428127	chr3:146073560-146082194	ZNF genes & repeats Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3363313	chr3:146075716-146081641	Weak transcription Active TSS ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146072800-146077200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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