Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1018271	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1033116	0.94[ASN][1000 genomes]
rs1033117	0.82[ASN][1000 genomes]
rs12485655	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12494817	0.95[ASN][1000 genomes]
rs12495507	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089349	0.82[ASN][1000 genomes]
rs1523336	0.84[JPT][hapmap]
rs1858387	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2137227	0.96[ASN][1000 genomes]
rs2137228	0.95[ASN][1000 genomes]
rs2137229	0.96[ASN][1000 genomes]
rs2867086	0.96[ASN][1000 genomes]
rs2867087	0.97[ASN][1000 genomes]
rs2867865	0.82[ASN][1000 genomes]
rs4553948	0.95[ASN][1000 genomes]
rs4563382	0.82[ASN][1000 genomes]
rs4681317	0.95[ASN][1000 genomes]
rs56004717	0.84[ASN][1000 genomes]
rs6440428	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6772169	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7642687	0.95[ASN][1000 genomes]
rs907491	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9842818	1.00[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv536759	chr3:146087689-146123589	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1011893	chr3:146090110-146125010	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146090600-146093000	Enhancers	Fetal Lung	lung
2	chr3:146090800-146093200	Enhancers	Fetal Stomach	stomach
3	chr3:146091600-146093200	Enhancers	HSMMtube	muscle
4	chr3:146091600-146094800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:146091800-146092800	Enhancers	Colon Smooth Muscle	Colon
6	chr3:146091800-146092800	Enhancers	A549	lung
7	chr3:146091800-146093200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:146092000-146094000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:146092400-146092800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:146092400-146093000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:146092400-146093200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:146092600-146093000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr3:146092600-146093200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:146092600-146093200	Enhancers	Ovary	ovary

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