Variant report

Variant	rs2867865
Chromosome Location	chr3:146106142-146106143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1033117	0.91[ASN][1000 genomes]
rs10804713	0.85[EUR][1000 genomes]
rs10804714	0.85[EUR][1000 genomes]
rs10935626	0.85[EUR][1000 genomes]
rs11720256	0.85[EUR][1000 genomes]
rs12053987	0.85[EUR][1000 genomes]
rs12054302	0.85[EUR][1000 genomes]
rs12054308	0.85[EUR][1000 genomes]
rs12054455	0.85[EUR][1000 genomes]
rs12486656	0.85[EUR][1000 genomes]
rs12486737	0.85[EUR][1000 genomes]
rs12492503	0.83[EUR][1000 genomes]
rs12494007	0.85[JPT][hapmap]
rs12494206	0.85[EUR][1000 genomes]
rs12495507	0.82[ASN][1000 genomes]
rs12497907	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12629356	0.85[EUR][1000 genomes]
rs12629420	0.85[EUR][1000 genomes]
rs12634107	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13064298	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13068800	0.85[EUR][1000 genomes]
rs13081634	0.85[EUR][1000 genomes]
rs13089349	0.91[ASN][1000 genomes]
rs13092702	0.85[EUR][1000 genomes]
rs1403643	0.85[EUR][1000 genomes]
rs1403644	0.85[EUR][1000 genomes]
rs1512077	0.82[ASN][1000 genomes]
rs1523335	0.90[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs1608391	0.85[JPT][hapmap];0.82[TSI][hapmap]
rs17351881	0.84[EUR][1000 genomes]
rs1858387	0.82[ASN][1000 genomes]
rs2037565	0.85[EUR][1000 genomes]
rs2222466	0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs2868436	0.85[JPT][hapmap]
rs34198003	0.84[EUR][1000 genomes]
rs34359311	0.84[EUR][1000 genomes]
rs34535967	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35082616	0.85[EUR][1000 genomes]
rs35223042	0.85[EUR][1000 genomes]
rs35336826	0.85[EUR][1000 genomes]
rs35374128	0.85[EUR][1000 genomes]
rs35695439	0.85[EUR][1000 genomes]
rs4333063	0.85[EUR][1000 genomes]
rs4380387	0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs4389447	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4444684	0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs4476473	0.85[EUR][1000 genomes]
rs4563382	0.91[ASN][1000 genomes]
rs4569626	0.85[EUR][1000 genomes]
rs4681120	0.85[JPT][hapmap]
rs4681318	0.83[EUR][1000 genomes]
rs4681319	0.85[EUR][1000 genomes]
rs4681320	0.84[EUR][1000 genomes]
rs4681321	0.84[EUR][1000 genomes]
rs4681322	0.85[EUR][1000 genomes]
rs56004717	0.93[ASN][1000 genomes]
rs57545585	0.84[EUR][1000 genomes]
rs58445343	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62272150	0.82[ASN][1000 genomes]
rs6440429	0.85[EUR][1000 genomes]
rs6440430	0.85[EUR][1000 genomes]
rs6440432	0.85[EUR][1000 genomes]
rs6440435	0.85[EUR][1000 genomes]
rs6766583	0.85[EUR][1000 genomes]
rs6766800	0.85[JPT][hapmap]
rs6770000	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6772169	0.93[ASN][1000 genomes]
rs6774338	0.85[EUR][1000 genomes]
rs6794891	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6794893	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6806369	0.85[EUR][1000 genomes]
rs6806535	0.82[TSI][hapmap]
rs7431927	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7434212	0.85[EUR][1000 genomes]
rs7614557	0.85[EUR][1000 genomes]
rs7619521	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7620107	0.85[EUR][1000 genomes]
rs7628445	0.85[EUR][1000 genomes]
rs7646988	0.84[EUR][1000 genomes]
rs7650361	0.85[EUR][1000 genomes]
rs907491	0.82[ASN][1000 genomes]
rs940193	0.85[JPT][hapmap];0.85[EUR][1000 genomes]
rs9842818	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9855283	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv536759	chr3:146087689-146123589	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1011893	chr3:146090110-146125010	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv877617	chr3:146096182-146172109	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877618	chr3:146096182-146192324	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877619	chr3:146106142-146172109	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146100800-146112600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:146101600-146111800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:146104800-146106800	Enhancers	A549	lung
4	chr3:146105400-146106200	Enhancers	Fetal Lung	lung
5	chr3:146106000-146106200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:146106000-146106200	Enhancers	Ovary	ovary

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