Variant report

Variant	rs907491
Chromosome Location	chr3:146091891-146091892
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:146090461..146092431-chr3:146097019..146099426,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1018271	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1033116	0.94[ASN][1000 genomes]
rs1033117	0.82[ASN][1000 genomes]
rs10935631	0.83[JPT][hapmap]
rs10935632	0.83[JPT][hapmap]
rs12485655	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12487546	0.83[JPT][hapmap]
rs12494817	0.95[ASN][1000 genomes]
rs12495507	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068178	0.83[JPT][hapmap]
rs13088225	0.82[JPT][hapmap]
rs13089349	0.82[ASN][1000 genomes]
rs13090489	0.83[JPT][hapmap]
rs1403641	0.83[JPT][hapmap]
rs1403645	0.83[JPT][hapmap]
rs1512077	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523336	0.88[JPT][hapmap]
rs1608392	0.83[JPT][hapmap]
rs1858387	0.97[ASN][1000 genomes]
rs2137227	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2137228	0.95[ASN][1000 genomes]
rs2137229	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2867086	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2867087	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2867865	0.82[ASN][1000 genomes]
rs4234358	0.83[JPT][hapmap]
rs4355250	0.83[JPT][hapmap]
rs4553948	0.95[ASN][1000 genomes]
rs4563382	0.82[ASN][1000 genomes]
rs4572737	0.83[JPT][hapmap]
rs4681119	0.83[JPT][hapmap]
rs4681317	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs56004717	0.84[ASN][1000 genomes]
rs6440428	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6767156	0.83[JPT][hapmap]
rs6772169	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7642687	0.95[ASN][1000 genomes]
rs7645939	0.83[JPT][hapmap]
rs7653701	0.83[JPT][hapmap]
rs9842818	0.84[CHB][hapmap];0.95[CHD][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv536759	chr3:146087689-146123589	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1011893	chr3:146090110-146125010	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146089400-146092400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:146090600-146093000	Enhancers	Fetal Lung	lung
3	chr3:146090800-146093200	Enhancers	Fetal Stomach	stomach
4	chr3:146091200-146092400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:146091200-146092600	Weak transcription	Ovary	ovary
6	chr3:146091600-146093200	Enhancers	HSMMtube	muscle
7	chr3:146091600-146094800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:146091800-146092800	Enhancers	Colon Smooth Muscle	Colon
9	chr3:146091800-146092800	Enhancers	A549	lung
10	chr3:146091800-146093200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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