Variant report

Variant	rs1033116
Chromosome Location	chr3:146060662-146060663
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1033117	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10935631	0.84[JPT][hapmap]
rs10935632	0.84[JPT][hapmap]
rs12485655	0.92[ASN][1000 genomes]
rs12487546	0.84[JPT][hapmap]
rs12494817	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12495507	0.94[ASN][1000 genomes]
rs13068178	0.84[JPT][hapmap]
rs13088225	0.82[JPT][hapmap]
rs13089349	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13090489	0.83[JPT][hapmap]
rs1403641	0.83[JPT][hapmap]
rs1403645	0.84[JPT][hapmap]
rs1512077	0.94[ASN][1000 genomes]
rs1523336	0.89[JPT][hapmap]
rs1608392	0.84[JPT][hapmap]
rs1858387	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2137227	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2137228	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2137229	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2867086	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2867087	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4234358	0.84[JPT][hapmap]
rs4355250	0.84[JPT][hapmap]
rs4553948	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4563382	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4572737	0.83[JPT][hapmap]
rs4681119	0.84[JPT][hapmap]
rs4681317	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56004717	0.83[ASN][1000 genomes]
rs6440428	0.86[ASN][1000 genomes]
rs6767156	0.84[JPT][hapmap]
rs6772169	0.80[ASN][1000 genomes]
rs7642687	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7645939	0.84[JPT][hapmap]
rs7653701	0.83[JPT][hapmap]
rs907491	0.94[ASN][1000 genomes]
rs9842818	0.88[CEU][hapmap];0.94[CHB][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998388	chr3:145960954-146087749	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146053600-146063600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:146054000-146063000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:146056600-146063400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:146059000-146063600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:146060400-146060800	Enhancers	Fetal Stomach	stomach
6	chr3:146060400-146060800	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:146060400-146061000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:146060400-146061600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:146060400-146061600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:146060400-146061600	Enhancers	NHDF-Ad	bronchial
11	chr3:146060400-146062000	Enhancers	Fetal Lung	lung
12	chr3:146060400-146062000	Enhancers	NHLF	lung
13	chr3:146060600-146060800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:146060600-146061000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr3:146060600-146061000	Enhancers	Colon Smooth Muscle	Colon
16	chr3:146060600-146061000	Enhancers	Fetal Kidney	kidney
17	chr3:146060600-146061000	Enhancers	HSMM	muscle
18	chr3:146060600-146061000	Enhancers	HSMMtube	muscle
19	chr3:146060600-146061200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:146060600-146061600	Enhancers	Ovary	ovary

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