Variant report

Variant	rs6770789
Chromosome Location	chr3:178588348-178588349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10936980	0.81[JPT][hapmap]
rs10936982	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10936984	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11712366	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11713575	0.88[ASN][1000 genomes]
rs13095781	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4380396	0.84[TSI][hapmap]
rs4381916	0.84[TSI][hapmap]
rs4621308	0.81[JPT][hapmap];0.82[TSI][hapmap]
rs6443590	0.81[JPT][hapmap];0.84[TSI][hapmap]
rs6443596	0.80[JPT][hapmap]
rs6443601	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6773785	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6780244	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6782524	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7428095	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7624064	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9832653	0.82[EUR][1000 genomes]
rs9844876	0.81[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6770789	FAM131A	cis	parietal	SCAN
rs6770789	MAP6D1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178585800-178588400	Enhancers	Ovary	ovary
2	chr3:178588200-178588600	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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