Variant report

Variant	rs9832653
Chromosome Location	chr3:178585678-178585679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10936980	0.86[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs35432713	0.82[EUR][1000 genomes]
rs4380396	0.82[CEU][hapmap];0.84[GIH][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs4381916	0.82[CEU][hapmap];0.84[GIH][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs4552328	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4618207	0.82[EUR][1000 genomes]
rs4621308	0.81[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6443590	0.85[CEU][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6443591	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6443592	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6443593	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6443594	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6443595	0.90[EUR][1000 genomes]
rs6443596	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6770789	0.82[EUR][1000 genomes]
rs6783202	0.84[JPT][hapmap]
rs7624064	0.82[EUR][1000 genomes]
rs7646561	0.90[EUR][1000 genomes]
rs7653581	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9844876	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9832653	MAP6D1	cis	cerebellum	SCAN
rs9832653	SOX2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178585400-178586800	Weak transcription	Left Ventricle	heart
2	chr3:178585600-178587000	Enhancers	Right Ventricle	heart

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