Variant report

Variant	rs6772504
Chromosome Location	chr3:86175647-86175648
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10511065	1.00[JPT][hapmap]
rs10511066	1.00[JPT][hapmap]
rs12054255	1.00[JPT][hapmap]
rs12631897	1.00[JPT][hapmap]
rs12633845	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12637221	1.00[JPT][hapmap]
rs28360787	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28436787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28576828	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4133222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67344309	0.81[ASN][1000 genomes]
rs73845770	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9809272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881757	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86174600-86175800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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