Variant report

Variant	rs677601
Chromosome Location	chr6:50028741-50028742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1238738	1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17736782	1.00[JPT][hapmap]
rs17736830	1.00[JPT][hapmap]
rs2147408	1.00[JPT][hapmap]
rs2147411	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs612591	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs639496	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs643279	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs646139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646158	1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs650691	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs666547	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671718	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673551	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs73739904	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73739916	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73739917	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73739929	1.00[ASN][1000 genomes]
rs73739930	1.00[ASN][1000 genomes]
rs9296624	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9463559	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9473701	1.00[JPT][hapmap]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:50028600-50029000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:50028600-50029000	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links