Variant report
| Variant | rs73739916 |
|---|---|
| Chromosome Location | chr6:50019744-50019745 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr6:50019709-50019852 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| DEFB112 | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1238738 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2147411 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs612591 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs639496 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs646139 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs646158 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs666547 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs671718 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs677601 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73739904 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73739917 | 0.83[ASN][1000 genomes] |
| rs73739927 | 0.83[AFR][1000 genomes] |
| rs73739929 | 0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73739930 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73739937 | 0.83[AFR][1000 genomes] |
| rs73739940 | 0.83[AFR][1000 genomes] |
| rs9463559 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3388030 | chr6:50018893-50022691 | Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
