Variant report
| Variant | rs9463559 |
|---|---|
| Chromosome Location | chr6:49964048-49964049 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:49962201..49964799-chr6:50021100..50023461,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1238738 | 1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17736782 | 1.00[JPT][hapmap] |
| rs17736830 | 1.00[JPT][hapmap] |
| rs2147408 | 1.00[JPT][hapmap] |
| rs2147411 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs612591 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs639496 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs643279 | 1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs646139 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs646158 | 1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs650691 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs666547 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs671718 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs673551 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs677601 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73739904 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73739916 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73739917 | 0.83[ASN][1000 genomes] |
| rs73739929 | 1.00[ASN][1000 genomes] |
| rs73739930 | 1.00[ASN][1000 genomes] |
| rs9296624 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs9473701 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv5295 | chr6:49955078-50007710 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:49962400-49965000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
