Variant report

Variant	rs6802255
Chromosome Location	chr3:116382409-116382410
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12107699	1.00[EUR][1000 genomes]
rs6769316	1.00[EUR][1000 genomes]
rs6769537	1.00[EUR][1000 genomes]
rs6807671	1.00[EUR][1000 genomes]
rs73859277	1.00[EUR][1000 genomes]
rs73859982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7610672	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829686	chr3:116325622-116494541	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432479	chr3:116356010-116454310	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116381400-116382600	Enhancers	Brain Substantia Nigra	brain
2	chr3:116381800-116382600	Enhancers	Rectal Smooth Muscle	rectum
3	chr3:116381800-116382800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:116382000-116382800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:116382000-116383000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:116382200-116382800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:116382200-116382800	Enhancers	Fetal Stomach	stomach
8	chr3:116382200-116383000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:116382200-116383000	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:116382200-116383000	Enhancers	Brain Hippocampus Middle	brain
11	chr3:116382400-116382600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:116382400-116382800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:116382400-116382800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:116382400-116382800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:116382400-116383000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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