Variant report

Variant	rs6807671
Chromosome Location	chr3:116190430-116190431
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12106881	1.00[EUR][1000 genomes]
rs12107699	1.00[EUR][1000 genomes]
rs2116310	1.00[EUR][1000 genomes]
rs2116311	1.00[EUR][1000 genomes]
rs58306572	1.00[EUR][1000 genomes]
rs58427084	1.00[EUR][1000 genomes]
rs59305024	1.00[EUR][1000 genomes]
rs59538449	1.00[EUR][1000 genomes]
rs60202396	1.00[EUR][1000 genomes]
rs6769316	1.00[EUR][1000 genomes]
rs6769537	1.00[EUR][1000 genomes]
rs6802255	1.00[EUR][1000 genomes]
rs72947967	1.00[EUR][1000 genomes]
rs73859277	1.00[EUR][1000 genomes]
rs73859982	1.00[EUR][1000 genomes]
rs7610672	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757886	chr3:116142130-116307542	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759171	chr3:116142130-116307542	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116189200-116190600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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