Variant report

Variant	rs73859982
Chromosome Location	chr3:116381912-116381913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12107699	1.00[EUR][1000 genomes]
rs6769316	1.00[EUR][1000 genomes]
rs6769537	1.00[EUR][1000 genomes]
rs6802255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6807671	1.00[EUR][1000 genomes]
rs73859277	1.00[EUR][1000 genomes]
rs7610672	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829686	chr3:116325622-116494541	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432479	chr3:116356010-116454310	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116379400-116382200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:116380800-116382000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:116381400-116382600	Enhancers	Brain Substantia Nigra	brain
4	chr3:116381800-116382600	Enhancers	Rectal Smooth Muscle	rectum
5	chr3:116381800-116382800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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