Variant report
| Variant | rs73859277 |
|---|---|
| Chromosome Location | chr3:116306431-116306432 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| RN7SL582P | TF binding region |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs12107699 | 1.00[EUR][1000 genomes] |
| rs59538449 | 1.00[EUR][1000 genomes] |
| rs6769316 | 1.00[EUR][1000 genomes] |
| rs6769537 | 1.00[EUR][1000 genomes] |
| rs6802255 | 1.00[EUR][1000 genomes] |
| rs6807671 | 1.00[EUR][1000 genomes] |
| rs73859982 | 1.00[EUR][1000 genomes] |
| rs7610672 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2757886 | chr3:116142130-116307542 | Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | esv2759171 | chr3:116142130-116307542 | Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
